Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLEKINETRDFLQAKGVTAPEFGLILGSGLGELAEEIENPIVVDYADIPNWGQSTVVGHAGKLVYGDLSGRKVLALQGRFHFYEGNTMEIVTFPVRIMRALACHSVLVTNAAGGIG--YGPGTLMLIKDHINVIG---TNPLIGENLEEFGPRFPDMSDAYTATYRQKAHQIAEKQNI--KLEEGVYLGVSGPTYETPAEIRAFQTMGAQAVGMSTVPEVIVAAHSGLKVLGISAITNFAAGFQ---SELNHEEVVEVTQRIKEDFKGLVKSLVAEL
1TCV Chain:A ((6-284))
TANIENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTS---HSGNLIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGFGNLVHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTNISVLDVESD-----------GAQRAELMQSWFEKIIEKL
General information:
TITO was launched using:
RESULT:
Template:
1TCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156739 for 2207 contacts (-71.0/contact) +
2D Compatibility (PS) -27093 + (NN) -8313 + (LL) 1316
1D Compatibility (HY) -26400 + (ID) 5100
Total energy: -222329.0 ( -100.74 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1TCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TCV-query.scw
PDB file :
Tito_Scwrl_1TCV.pdb
: