Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1N5N Chain:A ((13-174))
MAILNILEFPDPRLRTIAKPVEVV-----DDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDK----SEPRVFINPEFEPLT-----EEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK---------------------
General information:
TITO was launched using:
RESULT:
Template:
1N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76279 for 1286 contacts (-59.3/contact) +
2D Compatibility (PS) -17380 + (NN) -3157 + (LL) 600
1D Compatibility (HY) -13200 + (ID) 3000
Total energy: -112416.0 ( -87.42 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5N-query.scw
PDB file :
Tito_Scwrl_1N5N.pdb
: