Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASLLNARTAVITGGAQGLGLAIGQRFVAEGARVVLG----DVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAGEPSEVASVAVFLASDLSSYMTGTVLDVTGGRFI
3VZP Chain:D ((15-253))
-------RIAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPNSPRREKWLEQQKALGFD--FIASEGNVADWDSTKTAFDKVKSEVGEVDVLINNAGITRDVVFRKMTRADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQDVLDKIVATIPVKRLGLPEEIASICAWLSSEESGFSTGADFSLNGG---
General information:
TITO was launched using:
RESULT:
Template:
3VZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115264 for 1962 contacts (-58.7/contact) +
2D Compatibility (PS) -24951 + (NN) -2709 + (LL) 1292
1D Compatibility (HY) -12000 + (ID) 4800
Total energy: -158432.0 ( -80.75 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3VZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZP-query.scw
PDB file :
Tito_Scwrl_3VZP.pdb
: