Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRNRGFGRRELLVAMAMLVSVTGCARHASGARPASTTLPAGADLADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFKAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRAGGGY--DAEPREALLAEAATCVAGVLA |
3NY4 Chain:A ((2-265)) | -------------------------------------------LADRFAELERRYDARLGVYVPATGTTAAIEYRADERFAFCSTFAAPLVAAVLHQNPLTHLDKLITYTSDDIRSISPVAQQHVQTGMTIGQLCDAAIRYSDGTAANLLLADLGGPGGGTAAFTGYLRSLGDTVSRLDAEEPELNRDPPGDERDTTTPHAIALVLQQLVLGNALPPDKRALLTDWMARNTTGAKRIRAGFPADWKVIDKTGTGDYGRANDIAVVWSPTGVPYVVAVMSDRA--GGGYDAEPREALLAEAATCVAGVLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NY4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141836 for 2378 contacts (-59.6/contact) +
2D Compatibility (PS) -28926 + (NN) -21045 + (LL) 2424
1D Compatibility (HY) -30800 + (ID) 13000
Total energy: -233183.0 ( -98.06 by residue)
QMean score : 0.518
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