Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIDRPLEGKVAFITGAARGLGRAHAVRLAADGANIIAVDIC-EQIASVPYPLSTADDLAATVELVEDAGGGIVARQGDVRDRASLSVALQAGLDEFGRLDIVVANAGIA----MMQAGDDGWRDVIDVNLTGVFHTVQVAIPTLIEQGTGGSIVLISSAAGLVGIGSSDPGSLGYAAAKHGVVGLMRAYANHLAPQNIRVNSVHPCGVDTPMINNEFFQQWL-TTADMDAPHN-LGNALPVELVQPTDIANAVAWLASEEARYVTGVTLPVDAGFVNKR |
| 4RGB Chain:A ((21-294)) | ---GSLDGRVVFITGAARGQGRSHAVMCAEQGANIVGVDICEDID-IVPYKLGTYEELEETARLVEKTGQEMLFRKADVRDKAVLQEVFDAGVEQFGHIDTVIANAGVVLTNPDERDASEALRLGLDIMLIGVWNTFQVAIPHMKERGQGGNLIATSSMIALLDLTDGRGGTDAYLTSKLAITGLVRSYALMLAADRIRVNGVAPTNCSTPMITENPALFKVIEENPHLVNAMSTALPD-FPMIEPRDVSNAILFLISDAGRSFTGSVLKVDAGMDVKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182568 for 2357 contacts (-77.5/contact) +
2D Compatibility (PS) -28143 + (NN) -8179 + (LL) 340
1D Compatibility (HY) -17600 + (ID) 5350
Total energy: -241500.0 ( -102.46 by residue)
QMean score : 0.551
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