Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDK--SEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
3UWB Chain:A ((3-150))
---LKIKTIGDRCLRQKSEEVEFDKKEMSELYDQMCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLFDEGCLSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFN-------------------
General information:
TITO was launched using:
RESULT:
Template:
3UWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68403 for 1130 contacts (-60.5/contact) +
2D Compatibility (PS) -15285 + (NN) -1976 + (LL) 2396
1D Compatibility (HY) -11600 + (ID) 2700
Total energy: -97568.0 ( -86.34 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_3UWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWB-query.scw
PDB file :
Tito_Scwrl_3UWB.pdb
: