Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGFLTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNG-SLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
2PD3 Chain:D ((2-260))-GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNS--PYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLE-TSKSAFNTAMEISVYSLIELTNTLKPLL--NNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHVMGMGAVEEK


General information:
TITO was launched using:
RESULT:

Template: 2PD3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176828 for 2187 contacts (-80.9/contact) +
2D Compatibility (PS) -28560 + (NN) -14398 + (LL) 252
1D Compatibility (HY) -30800 + (ID) 6400
Total energy: -256734.0 ( -117.39 by residue)
QMean score : 0.596

(partial model without unconserved sides chains):
PDB file : Tito_2PD3.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PD3-query.scw
PDB file : Tito_Scwrl_2PD3.pdb: