Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNEKKERIIKTSIRLFA-KKGFAATTIQEIASECGISKGAFYLHFKSKEALLLSACEYYIGMSMNKMKNIEEDLAGKPPKEVLKKQIGAQFEDFRDHKDFIVLLLTENIIPENQEIKQYFYKVTMETDKLYRNALLVSY---GEGIERYVADLSIMARGIVHSYMNVMVFNGELNIDAEEISAFIIERLDDLVQGLSRSALNPIVSKDIFNPMPAGKDQLLEDIQKVKENSTLPEDITVSLDVIEEELTQDKPRKPIIKGMLSNLAGTNDKEVERLRALILSLSQFDHKKSSL
4GFK Chain:A ((8-176))--NRREEILQALAEMLESN-----ITTAKLAKQVGVSEAALYRHFPSKTRMFEGLIEFIEESLMSRINRIFD--EEKDTLNRIRLVMQLLLAFAERNPGLTRILSGHALMFENERLRDRINQLFERIETSLRQILRERKLREGKSFPVDENILAAQLLGQVEGSLNRFVRSDF------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4GFK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 555 -88642 -159.72 -554.01
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.62

3D Compatibility (PKB) : -159.72
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.519

(partial model without unconserved sides chains):
PDB file : Tito_4GFK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4GFK-query.scw
PDB file : Tito_Scwrl_4GFK.pdb: