Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
1KAO Chain:A ((1-123))
MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESE--------------
General information:
TITO was launched using:
RESULT:
Template:
1KAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72828 for 828 contacts (-88.0/contact) +
2D Compatibility (PS) -13259 + (NN) -5195 + (LL) 732
1D Compatibility (HY) -12000 + (ID) 2000
Total energy: -104550.0 ( -126.27 by residue)
QMean score : 0.369
(partial model without unconserved sides chains):
PDB file :
Tito_1KAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAO-query.scw
PDB file :
Tito_Scwrl_1KAO.pdb
: