Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIITIFGPPGSGKGTQSSLLIERYNLKLISVGDLLRNIISSGSELGKKIKDTVESGNLIQDGVICELLYDQLALM-DDNFLFDGFPRNLNQAHFLTQILRERYNRDVDIVIELQLNDKVAIDRLKNRLVCLDCKSVYSTSSFKDDNNLVCTRCKSARLEKRIDDSDLSAIDRRIGEYHVQVKSLREYYRD-K-LLMIDANLNVDQVKQEIESKISCSLV
1ZD8 Chain:A ((7-214))
LRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAY------QIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKT-VGIDDLTGEPLIQREDD-KPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTE-TNKIWPYVYAFLQTKVP
General information:
TITO was launched using:
RESULT:
Template:
1ZD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116818 for 1483 contacts (-78.8/contact) +
2D Compatibility (PS) -21942 + (NN) -5786 + (LL) 228
1D Compatibility (HY) -9600 + (ID) 3100
Total energy: -157018.0 ( -105.88 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1ZD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZD8-query.scw
PDB file :
Tito_Scwrl_1ZD8.pdb
: