Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVTKLAPDFKAPA-VLG--NNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGMKATHQGVAEYLKENSIKL
3SBC Chain:A ((23-213))
AQVQKQAPTFKKTAVVDGVFD-----EVSLDKYKG-KYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWTPGAATIKPTVEDSKEYFEAANK--
General information:
TITO was launched using:
RESULT:
Template:
3SBC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126749 for 1470 contacts (-86.2/contact) +
2D Compatibility (PS) -19565 + (NN) -996 + (LL) 200
1D Compatibility (HY) -12000 + (ID) 4350
Total energy: -163460.0 ( -111.20 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_3SBC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SBC-query.scw
PDB file :
Tito_Scwrl_3SBC.pdb
: