Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVT-FP-LSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEK-----DRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
1Y6H Chain:A ((1-170))
--SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTM--RH----------AEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKD--TSGFWEGCLSVPGMRG-YVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLD---
General information:
TITO was launched using:
RESULT:
Template:
1Y6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56154 for 1260 contacts (-44.6/contact) +
2D Compatibility (PS) -17639 + (NN) -8240 + (LL) 1288
1D Compatibility (HY) -12800 + (ID) 2700
Total energy: -96245.0 ( -76.38 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6H-query.scw
PDB file :
Tito_Scwrl_1Y6H.pdb
: