Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILLIGASGTLGSAVKDRLEK-KAEVITAGRHSG------DVTVDITSIDSIKKMYEQ----VGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND--KGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDKLE--------------------SFFQGFVPVPAAKVARAFEKSVFGA---QTGESYKVY
3VTZ Chain:A ((7-242))
KVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDE-DVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVD
General information:
TITO was launched using:
RESULT:
Template:
3VTZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70347 for 1650 contacts (-42.6/contact) +
2D Compatibility (PS) -20814 + (NN) -4375 + (LL) -172
1D Compatibility (HY) -6000 + (ID) 2050
Total energy: -103758.0 ( -62.88 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_3VTZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VTZ-query.scw
PDB file :
Tito_Scwrl_3VTZ.pdb
: