Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIQAAGIEFDLAFTSVLKRAIKTTNLALEAADQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPDMAKDDEHSAHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFEFDEKLNLVSEYYLGK
3D8H Chain:A ((20-247))
TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPIINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVERVKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVTKKYYLI-
General information:
TITO was launched using:
RESULT:
Template:
3D8H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76616 for 1874 contacts (-40.9/contact) +
2D Compatibility (PS) -24462 + (NN) -5074 + (LL) -172
1D Compatibility (HY) -21600 + (ID) 5550
Total energy: -133474.0 ( -71.22 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3D8H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D8H-query.scw
PDB file :
Tito_Scwrl_3D8H.pdb
: