Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKPIVR-DTFFLQQKSQMASR----ADVSLAKDLQDTLHA----------NQNYCVGMAANMIGSLKRVIIINVG-----ITNLVMFNPVLVAKS-DP--YETEESCLSLVG--CRSTQRYRHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGILI
2OKL Chain:A ((4-164))
TMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMF
General information:
TITO was launched using:
RESULT:
Template:
2OKL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72149 for 1014 contacts (-71.2/contact) +
2D Compatibility (PS) -13833 + (NN) 2827 + (LL) 0
1D Compatibility (HY) -8000 + (ID) 1950
Total energy: -93105.0 ( -91.82 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_2OKL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKL-query.scw
PDB file :
Tito_Scwrl_2OKL.pdb
: