Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRIDPSKLELEERLVTVNRVAKVV-KGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPMV-GTTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPINMIRATLQGLSELKRAEDVAKLRGKSVEELLG
5AJ3 Chain:E ((212-375))
----GETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGKGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLKFKRTHIKMKKQPRGYGLHCHRAIMTICRLIGIKDLYAKVSGSVNMLNLTRGLFLGLSRQETHQQLADKKSLHVVEFRE
General information:
TITO was launched using:
RESULT:
Template:
5AJ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73203 for 1178 contacts (-62.1/contact) +
2D Compatibility (PS) -17505 + (NN) -4358 + (LL) 612
1D Compatibility (HY) -7200 + (ID) 2300
Total energy: -103954.0 ( -88.25 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_5AJ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AJ3-query.scw
PDB file :
Tito_Scwrl_5AJ3.pdb
: