Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGYRILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVLSVI--QKVDLVIMDVMLPGEDGYQMSAKIKKLGLGIPVIFLSARNDMDSKLQGLQIG-EDYMVKPFDPRELLLRMRNMLEHHYGTFTQ---IKHLYIDAVTKKVFNESLHDEVLFTAIERKIFFYLYENRDSILTKEHFFEYLWQLED-RNPNIVNVHIKKIRAKINDQAGEMIENIYGEGYRLNTVVKK
4S04 Chain:A ((2-219))
----KILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPDEDGLHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHNNQGDNEISVGNLRLNVTRRLVWLG--ETALDLTPKEYALLSRLMMKAGSPVHREILYNDIYSGDNEPATNTLEVHIHNLREKIGK---SRIRTVRGFGYMLANN---
General information:
TITO was launched using:
RESULT:
Template:
4S04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138747 for 1580 contacts (-87.8/contact) +
2D Compatibility (PS) -23084 + (NN) -14036 + (LL) 752
1D Compatibility (HY) -13200 + (ID) 2800
Total energy: -191115.0 ( -120.96 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4S04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4S04-query.scw
PDB file :
Tito_Scwrl_4S04.pdb
: