Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTLA----GGPFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGIL-AESDDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
2AVD Chain:A ((11-229))
-QCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDV-----RVYISLLPLGDGLTLAFKI
General information:
TITO was launched using:
RESULT:
Template:
2AVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137558 for 1817 contacts (-75.7/contact) +
2D Compatibility (PS) -23588 + (NN) -17629 + (LL) 332
1D Compatibility (HY) -11200 + (ID) 3000
Total energy: -192643.0 ( -106.02 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2AVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AVD-query.scw
PDB file :
Tito_Scwrl_2AVD.pdb
: