Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAM-----TARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
3U04 Chain:A ((3-183))
MSVLSIVTVPDKRLSLCSEEVEKV-----DQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPEE---IEGYELYGGPYCIINPKIVDIS-----QEKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKK---------------------
General information:
TITO was launched using:
RESULT:
Template:
3U04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83588 for 1302 contacts (-64.2/contact) +
2D Compatibility (PS) -17533 + (NN) -3127 + (LL) 504
1D Compatibility (HY) -13200 + (ID) 2650
Total energy: -119594.0 ( -91.85 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3U04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U04-query.scw
PDB file :
Tito_Scwrl_3U04.pdb
: