Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEMALAQQVPNLGLARFSVQDKSILITGATGSLGRVAARALADAGARLTLAGGNSAGLAELVNGAGIDDAAVVTCRPDSLADAQQMVEAALGRYGRLDGVLVASGSNHVAPITEMAVEDFDAVMDANVRGAWLVCRAAGRVLLEQGQGGSVVLVSSVRGGLGNAAGYSAYCPSKAGTDLLAKTLAAEWGGHGIRVNALAPTVFRSAVTEWMFTDDPKGRATREAMLARIPLRRFAEPEDFVGALIYLLSDASSFYTGQVMYLDGGYTAC
3D3W Chain:A ((4-244))
------------------FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP--GIEPVCVDLGDWEATERALG----SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA-VTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSD-P---HKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFWAC
General information:
TITO was launched using:
RESULT:
Template:
3D3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172885 for 2083 contacts (-83.0/contact) +
2D Compatibility (PS) -26144 + (NN) -9015 + (LL) 2112
1D Compatibility (HY) -16800 + (ID) 3900
Total energy: -226632.0 ( -108.80 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3D3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D3W-query.scw
PDB file :
Tito_Scwrl_3D3W.pdb
: