Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKGSMTAHATPNEPDYPPPPGGPPPPADIGRLLLRCHDRPGIIAAVSTFLARAGANIISLDQHSTAPEGGTFLQRAIFHLPGLTAAVDELQRDFGSTVADKFGIDYRFAEAAKPKRVAIMASTEDHCLLDLLWRNRRGELEMSVVMVIANHPDL-AAHVRPFGVPFIHIPATRDTRTEAEQRQLQLLS-GNVDLVVLARYMQILSPGFLEAIGCPLINIHHSFLPAFTGAAPYQRARERGVKLIGATAHYVTEVLDEGPIIEQDVVRVDHTHTVDDLVRVGADVERAVLSRAVLWHCQDRVIVHHNQTIVF
3OBI Chain:A ((4-286))
---------------------------HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND-TESGHFFMRVVFNAAAKVIPLASLRTGFG-VIAAKFTMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIGATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSRALHYHLDDRVILNGRKTVVF
General information:
TITO was launched using:
RESULT:
Template:
3OBI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -234514 for 2197 contacts (-106.7/contact) +
2D Compatibility (PS) -29934 + (NN) -11043 + (LL) -1044
1D Compatibility (HY) -24800 + (ID) 6450
Total energy: -307785.0 ( -140.09 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3OBI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OBI-query.scw
PDB file :
Tito_Scwrl_3OBI.pdb
: