Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARPLAMIAALGENRAIGIDNRLPWR-LPADLKHFKAMTL------------------------GKPVIMGRKTWDSLG---RPLPGRLNLVVSRQAGLAL--EGAEVFASLDAALARAEAWAQAEDADELMLIGGAQLYAEAL--PRAARLYLTRVGLAPEGDAFFPEIDGAAWRLASSIEHAAADDA-PAYAFEVWERR
2BL9 Chain:A ((24-238))
-AGTKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEAKLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKEDVKEKVFIIDSIDDLLLLLKKL----KYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEV--YNSKGTTLDFLVYSKV
General information:
TITO was launched using:
RESULT:
Template:
2BL9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63145 for 1076 contacts (-58.7/contact) +
2D Compatibility (PS) -16960 + (NN) -2299 + (LL) 1008
1D Compatibility (HY) -12000 + (ID) 2500
Total energy: -95896.0 ( -89.12 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_2BL9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BL9-query.scw
PDB file :
Tito_Scwrl_2BL9.pdb
: