Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLVKRASLLRRDSVHGPFDGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDNFH---KGSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEATIC-NDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR |
| 2B4R Chain:O ((11-344)) | -------------------------------------------------------------------------------------------------------------ATKLGINGFGRIGRLVFRAAFGR----KDIEVVAINDPFM---DLNHLCYLLKYDSVHGQFPCEVTH--ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVD--VVCESTGVFLTKELASSHLKG-GAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAA-EGPLKGILGYTE-DEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITT-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2B4R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -227882 for 2924 contacts (-77.9/contact) +
2D Compatibility (PS) -36391 + (NN) -16254 + (LL) 8188
1D Compatibility (HY) -21600 + (ID) 6050
Total energy: -299989.0 ( -102.60 by residue)
QMean score : 0.531
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