Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHRSPLAWLRLLLAAVLGAFLLGGPLHAAETAATRSPAWAQAVDPSINLYRMSPTLYRSALPNAQSVALLQRLQVKTVVSFIKDDDRAWLGQAPVRVLSLPTHADRVDD--AEVLSVLRQLQAA-EREGPVLMHCKHGNNRTGLFAAMYRIVVQGWDKQAALEEMQHGGFGDEDDMRDASAYVRGADVDGLRLAMANGECSPSRFAVCHVREWMAQALDRP
2HCM Chain:A ((8-147))
--------------------------------------------APPPFARVAPALFIGNARAAGATELLVRAGITLCVNVSRQQPGP--RAPGVAELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSARPVAEP-NLGFWAQLQKYE----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2HCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62775 for 1148 contacts (-54.7/contact) +
2D Compatibility (PS) -15028 + (NN) -10773 + (LL) 6608
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -86468.0 ( -75.32 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_2HCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HCM-query.scw
PDB file :
Tito_Scwrl_2HCM.pdb
: