Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGNAPAKKDTEQEESVNEFLAKARGDFLYRWGNPAQNTASSDQFERLRTLGMG-SFGRVMLVRHQETGG-HYAMKILNKQKVVKM-KQVEHILNEKRILQAID-FPFLVKLQFSFKDNS-YLYLVMEYVPGGEMFSRLQRV-GRFSEPHACFYAAQVVLAVQYLHSLDLIHRDLKPENLLID-QQGYLQVTDFGFAKRV----KGRTWTLCGTPEYLAPEIILSK---GYNKAVDWWALGVLIYEMAVGF-PPFYADQP--IQIYEKIVSG------RVRFPSKLSSDLKHLLRSLLQVDLTKRFGNLRNGVGDIKNHKWFATTS---WIAIYEKKVEAPFIPKYTGPGDASNFDDYEEEELRI--SINEKCAKEFSEF |
| 1CDK Chain:A ((8-350)) | KGSEQESVKEFLAKAKEDFLKKWENPAQNTA------H--LDQFERIKTLGT-GSFGRVMLVKHKETG-NHFAMKILDKQKVVK-LKQIEHTLNEKRILQAV-NFPFLVKLEYSFKDN-SNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRVKGRT----WTLCGTPEYLAPEIILS-KGY--NKAVDWWALGVLIYEMAAG-YPPFFAD--QPIQIYEKIVSGKVRFPS------HFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA---TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSI--NEKCGKEFSEF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181268 for 2503 contacts (-72.4/contact) +
2D Compatibility (PS) -33582 + (NN) -14906 + (LL) 728
1D Compatibility (HY) -40800 + (ID) 12300
Total energy: -282128.0 ( -112.72 by residue)
QMean score : 0.734
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