Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNNSVSVAVIEKNNLPRIIDDNRAFAISQGSRKILEKLGIWQFIESEAEPILDICILDENSPITVHYNHKMVSEEPMGYVINSTVIWNAINNNFLNKLNIYSL--HSYRTITCDAGYVEVTLGNNQKLISSLLICAEGKNSKLPGLFSMSIIKFDYKQSSIVFNVKHEL---HH--QNLAVEQ--FFPG-GPFAILPMKSGYTSSIVWTEKSEISKML-MNLSEEEFIIELKKRFGSYLGEVKLDGERKSYPL-SFASAKKLYKSRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV |
| 3ALJ Chain:A ((11-346)) | -TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE--LRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHN-KS-VSKE--TF-NGLPWRIMTRSHLHDALVNRARAL-GVDISVNSEAVAADP---VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNE-NELYLGLMAPAADPRGSSVPIDLEVWVEMFPF-LEPCLIEA-AKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGS----S--VEDALVAWETRIRPITDRCQALSGDYAANRSLSKGNMFTPAALEAARYDPLRRVYSWPQ------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ALJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214944 for 2853 contacts (-75.3/contact) +
2D Compatibility (PS) -33987 + (NN) -3439 + (LL) 1012
1D Compatibility (HY) -3600 + (ID) 2550
Total energy: -257508.0 ( -90.26 by residue)
QMean score : 0.429
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