Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNA-FNLYGALSMANSG---PNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
2POE Chain:A ((15-175))
-------------YFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGAKKPNTNGSQFFITYSSLP----------------------------QLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHS
General information:
TITO was launched using:
RESULT:
Template:
2POE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55109 for 1241 contacts (-44.4/contact) +
2D Compatibility (PS) -16575 + (NN) -5807 + (LL) 1432
1D Compatibility (HY) -10000 + (ID) 3350
Total energy: -89409.0 ( -72.05 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_2POE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2POE-query.scw
PDB file :
Tito_Scwrl_2POE.pdb
: