Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKE-GTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
1OD6 Chain:A ((1-159))
---MHVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLEN----QYLFSAEERLAIIREATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAKLG
General information:
TITO was launched using:
RESULT:
Template:
1OD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113873 for 1213 contacts (-93.9/contact) +
2D Compatibility (PS) -16791 + (NN) -7456 + (LL) 560
1D Compatibility (HY) -17600 + (ID) 3800
Total energy: -158960.0 ( -131.05 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_1OD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OD6-query.scw
PDB file :
Tito_Scwrl_1OD6.pdb
: