Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------------------------MKKNILNLALVGALSASFLMAKPAH----NANNSTHNTKETTDASAGVLATVDGRPITKSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTPEFKAMMEA--------------VKKQALVEFWAKKQAEEVKKIQIPEKEMQD--------FYNANKDQLFVKQEAHARHILVK-----TEDEAKRIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK |
| 1M5Y Chain:A ((25-427)) | VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIK-SGKTTFAAAAKEFSQDPGS--ANQGGDLGWATPDIFDPAFRDALTRLNKGQMSA-PVHSSFGWHLIELLDTRNV---------DRAYRMLMNRKFSEEAASWMQEQRASAYVKILS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 18671 for 1762 contacts (10.6/contact) +
2D Compatibility (PS) -30160 + (NN) -8820 + (LL) 1092
1D Compatibility (HY) -2800 + (ID) 2950
Total energy: -24967.0 ( -14.17 by residue)
QMean score : 0.274
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