Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPFSKFLENLTAPFKRIKNRSLVLALGFLILTFCLLLFLILSDVSRLISSKDFLYVIQSHPKQTLIEDENYFYANKGLYKTNKEAFLRVYKIPESMPIEKRESLSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESAHKNELENAFQRYDALGVRFEDIAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLVGPPGVGKTMIAKALASEARVPFFYESGSAFSQIYVGAGAKKVHELFMHAKKHAPSIIFIDEIDALGKARGGH---RSDEREATLNQLLTEMDGFLQNDEVVVIGATNQMEVMDEALLRSKRFDRRIFISLPDLLERQSILEKLLENKKH--ALDYLKIAKICVGFSGAMLATLINESALNALKHQRKEITHGDILEVKDKIAYGKKKPQTLDENQKELVALYQSAKALSAYWLEIEFDKASLLGEFIAFNENKIHSESEIKNYIKVYLSGTIILELLYKERYSLSKQDLQKAKFLNEFMASELLLAPTKESLSVLYEEQLEFLKPQIAACKRLSALLLEQECLEHANFYDLLNG |
| 1LV7 Chain:A ((8-255)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------KTTFADVAGCDEAKEEVAELVEYLREPSRF-----KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGL----------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LV7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126649 for 1906 contacts (-66.4/contact) +
2D Compatibility (PS) -26067 + (NN) -14289 + (LL) 27312
1D Compatibility (HY) -18400 + (ID) 5950
Total energy: -164043.0 ( -86.07 by residue)
QMean score : 0.610
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