Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
1N5N Chain:A ((13-172))
-MAILNILEFPDPRLRTIAKPVE-VVDDAVRQLIDDMFETM--YE----------APGIGLAATQVNVHKRIVVMDLSED--KSEPRVFINPEFEPLTEE--MDQYQEGCLSVPGFYE-NVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKL----
General information:
TITO was launched using:
RESULT:
Template:
1N5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58380 for 1276 contacts (-45.8/contact) +
2D Compatibility (PS) -16950 + (NN) -3158 + (LL) 1156
1D Compatibility (HY) -13600 + (ID) 2450
Total energy: -93382.0 ( -73.18 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_1N5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5N-query.scw
PDB file :
Tito_Scwrl_1N5N.pdb
: