Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MKKKLILGLVMMMALFSLAACGGGGDVVKTDSGDVTKDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYG---DQFSAVLTQSGLTEKSFKSQLKYNLLVQKATEANTD----TSDKTLKKYYETWQPDITVSHILV------------ADENKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMDK-PATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKDANVKVEDKDLKDAFKDFDGSSSSDSDSSK------------------------------------------------------------------------------- |
| 1M5Y Chain:A ((25-427)) | VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQK--------MGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQ-VTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTAK-KGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDRAYRMLMNRKFSEEAASWMQEQRASAYVKILS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 45596 for 1760 contacts (25.9/contact) +
2D Compatibility (PS) -30968 + (NN) -19559 + (LL) 956
1D Compatibility (HY) -10800 + (ID) 2700
Total energy: -17475.0 ( -9.93 by residue)
QMean score : 0.424
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