Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLVDYMTSGPVIIEVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
1VYA Chain:A ((1-133))
MESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLASKPFFQGLVDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLASEPGTIRGDFAVD-----IGRNVIHGSDSIESANKEIALWFPE
General information:
TITO was launched using:
RESULT:
Template:
1VYA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71563 for 987 contacts (-72.5/contact) +
2D Compatibility (PS) -14033 + (NN) -3888 + (LL) -268
1D Compatibility (HY) -14000 + (ID) 3500
Total energy: -107252.0 ( -108.66 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1VYA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VYA-query.scw
PDB file :
Tito_Scwrl_1VYA.pdb
: