Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQPWNANIHYDALLDAMVPLGTQCVLDVGCGDGLLAARLARRIPYVTAVDIDAPVLRRAQTRFA--NAPIRWLHADIMTAELPNAGFDAVVSNAALHHIEDTRTALSRLGGLVTPGGTLAVVTFVTPSLRNG-LWHLTSWVACGMANRVKGKWEHSAPIKWPPPQTLHELRSHVRA-LLPGACIRRLLYGRVLVTWRAPV
2YQZ Chain:A ((39-194))
---------------------EEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAE---------EGFPVERGLHAKRLKEVEEALRRLGLKPRTRE---------------
General information:
TITO was launched using:
RESULT:
Template:
2YQZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93744 for 1041 contacts (-90.1/contact) +
2D Compatibility (PS) -16106 + (NN) -5004 + (LL) 3728
1D Compatibility (HY) -4000 + (ID) 1600
Total energy: -116726.0 ( -112.13 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_2YQZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YQZ-query.scw
PDB file :
Tito_Scwrl_2YQZ.pdb
: