Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTGFGLRLAEAKAR-RGPLCLGIDPHPELLRGWDLATTADGLAAFCDICVRAFADF-AVVKPQVAFFESYGAA-GFAVLERTIAELRAADVLVLADAKRGDIGATMSAYATA-WVGDSPLAADAVTASPYLGFGSLRPLLEVAAA---HGRGVFVLAATSNPEGAAVQNAAADGRSVAQLVVDQVGAANEAAGPGPGSIGVVVGATAPQAPDLSAFTGPVLVPGVGVQGG---------RPEALGGLGGAASSQLLPAVAREVLRAGPGVPELRAAGERMRDAVAYLAAV |
| 3GDM Chain:A ((16-258)) | --PVAAKLFNIMHEKQTNLCASLDVRT---------------TKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALS---AKYNFLLFEDRRFADIGNTVKLQYSAGVYRIAE-WADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEY-------TKGTVDIAKS------DKDFVIGFIAQRDMG--GRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGS----D-IIIVGRGLFAKGRDAK---VEGERYRKAGWEA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GDM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137919 for 1836 contacts (-75.1/contact) +
2D Compatibility (PS) -25291 + (NN) -14005 + (LL) 3940
1D Compatibility (HY) -9600 + (ID) 2300
Total energy: -185175.0 ( -100.86 by residue)
QMean score : 0.441
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