Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHSRLIGALTVVAIIVTACGSQPKSQPAVAPTGDAAAATQVPAGQTVPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVP----------------AMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTALTSR
3HA9 Chain:A ((27-187))
--------------------------------NAPRAAGHSEEVLEREAS---FSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGD-PSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLYAGTTPSLGELESVIKSV---
General information:
TITO was launched using:
RESULT:
Template:
3HA9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81963 for 1010 contacts (-81.2/contact) +
2D Compatibility (PS) -15415 + (NN) -4269 + (LL) 3076
1D Compatibility (HY) -10800 + (ID) 1550
Total energy: -110921.0 ( -109.82 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3HA9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HA9-query.scw
PDB file :
Tito_Scwrl_3HA9.pdb
: