Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGAVPMLAIDGPSGAGKGTVAGLLARRLGWNLLDSGALYRLLAFAAVNHGVDLTNEEALKVLAAHLDVQFVAADGSHGQRIILEGEEVTDVIRTEQVGAGASQVAALPAVRDALLQRQRAFREAPGLVADGRDMGTVVFPDAPLKIFLTASAEERARRRYLQLKAKGADVDQSALLEEIRERDERDSQRAVAPLKPADDAILLDSTEMSIEAVVETIIRHCERQGWDV
1CKE Chain:A ((3-227))
--AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNG--NLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEI-------------KLVPAADALVLDSTTLSIEQVIEKALQYARQKLALA
General information:
TITO was launched using:
RESULT:
Template:
1CKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130712 for 1672 contacts (-78.2/contact) +
2D Compatibility (PS) -23483 + (NN) -17760 + (LL) 1172
1D Compatibility (HY) -21200 + (ID) 6250
Total energy: -198233.0 ( -118.56 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_1CKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CKE-query.scw
PDB file :
Tito_Scwrl_1CKE.pdb
: