Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTIRLAINGFGRIGRNVLRALYT-GHYREQLQVVAIND-LGDAAVNAHLFQYDSVHGHFPGEVEH-DAESLRVMGDRIAV-SAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKDVEATVVYGVNHEVL-RASHRIVSNASCTTNCLAPVAQVLHRELGIEHGLMTTIHAYTNDQNLSDVYHPDLYRA-RSATQSMIPTKTGAAEAVGLVLPELAGKLTGLAVRVPVINVSLVDLTVQVARDTSVDEVNRLLREASEGSP--VLGYNTQPLVS-VDFNHDPRSSIFDANHTKV-SGRLVKAMAWYDNEWGFSNRMLDSALALAAARD |
| 1HDG Chain:O ((1-332)) | --ARVAINGFGRIGRLVYRIIYERKNPD--IEVVAINDL-TDTKTLAHLLKYDSVHKKFPGKVEYT-ENSLIVDGKEIKVFAE-PDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPE-HTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAA-AVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSS-DIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLLKM-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HDG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194890 for 2814 contacts (-69.3/contact) +
2D Compatibility (PS) -34234 + (NN) -10134 + (LL) 1120
1D Compatibility (HY) -30800 + (ID) 8550
Total energy: -277488.0 ( -98.61 by residue)
QMean score : 0.506
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