Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFERPILITGGAGFIGSHLTDALLARGYRVRVLDNLSTGKRDNLPLDDERVELLEGDAADAATLAAALKGCAAVAHLAAVASVQASVDDPVATHQSNFIATLNLCEAMREQGVKRVVFASSAAVYGQNGEGTAIDEDTPKSPLTPYASDKLASEYYLDFYRRQ-HGLEPAIFRFFNVYGPRQDPSSPYSGVISIFTERALKGTPITVFGDGEQTRDFIYVADLVDFLVQALEATAVEPGAVNVGLNRSISLKQLLAEIGQVLGGLPPVTHADARAGDIRHSRANNERLLRRFRFD-QPTPMGVGLARLLGR |
3VPS Chain:A ((7-300)) | --KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPP---EGTGKFLEKPVLELE--ERDLSDVRLVYHLASHKSVPRSFKQP-LDYLDNVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTL-PTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERP----DALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRP--LPSVVNFGSGQSLSVNDVIRILQATSPAAE-VARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEGIRLTLE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VPS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152020 for 2547 contacts (-59.7/contact) +
2D Compatibility (PS) -31360 + (NN) -9809 + (LL) 964
1D Compatibility (HY) -16000 + (ID) 4800
Total energy: -213025.0 ( -83.64 by residue)
QMean score : 0.550
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