Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIFAVGDVHGEITLLDELLENWD-KERERLLFVGDLIDRGENPAAVLRRVKALADQTGAIVLKGNHEQMLLDFLENPSGKMHYYLSQGGMETIQSLIADSLDKKMTPEGLAKRVKEEASELIDFIRKLPLYYE----EGKYVFVHAGVDLTKKDWHDTEERDFFWIREPFLFGQNKTGKVFIFGHTPVQNLHIDESSGIWVSE-DKTRLDIDGGAVFGGELHGVVVEEKVITKSFSVKK
3QFM Chain:A ((11-194))
MTKIALLSDIHGNTTALEAVLADARQLGVDEYWLLGDILMPGTGRRRILDLLDQL---PITARVLGNWEDSLWHGVRKEL---DS--TRPSQ----RYLLRQC---------QYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHLPDKNWGRELIHTGKQEE-FDRLVTH---PPCDIAVYGHIHQQLL---------R-YGTGGQLIVNPGSIG----------------------
General information:
TITO was launched using:
RESULT:
Template:
3QFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82034 for 1387 contacts (-59.1/contact) +
2D Compatibility (PS) -19389 + (NN) -12460 + (LL) 3284
1D Compatibility (HY) -6000 + (ID) 1500
Total energy: -118099.0 ( -85.15 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_3QFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QFM-query.scw
PDB file :
Tito_Scwrl_3QFM.pdb
: