Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAECELV
1NHK Chain:R ((2-137))
--IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIH
General information:
TITO was launched using:
RESULT:
Template:
1NHK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53247 for 1048 contacts (-50.8/contact) +
2D Compatibility (PS) -14415 + (NN) -2244 + (LL) 352
1D Compatibility (HY) -12800 + (ID) 3950
Total energy: -86304.0 ( -82.35 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1NHK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NHK-query.scw
PDB file :
Tito_Scwrl_1NHK.pdb
: