Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
1JOR Chain:A ((1-149))
-------------------------------------------------------------------------------ATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
General information:
TITO was launched using:
RESULT:
Template:
1JOR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37908 for 1072 contacts (-35.4/contact) +
2D Compatibility (PS) -16148 + (NN) -6583 + (LL) 5684
1D Compatibility (HY) -16400 + (ID) 7400
Total energy: -78755.0 ( -73.47 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_1JOR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOR-query.scw
PDB file :
Tito_Scwrl_1JOR.pdb
: