Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDG-IMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKD---SYTANLFDSNSIKQIDINVKTK
1V1P Chain:B ((114-211))
---------------------------------------------TNTPLFVNKVNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGT---SKYGKIIINLKDENKVEIDLGDKLQFERMGDVLNSKDIRGISVTIN--
General information:
TITO was launched using:
RESULT:
Template:
1V1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19810 for 618 contacts (-32.1/contact) +
2D Compatibility (PS) -9892 + (NN) -483 + (LL) 4248
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -30887.0 ( -49.98 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1V1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V1P-query.scw
PDB file :
Tito_Scwrl_1V1P.pdb
: