Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITVVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDIYPGELGIDVKVG-PLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRIEEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
1V8F Chain:A ((1-275))
-MRTVSTVAELRAAL-----PREGVGFVPTMGYLHRGHLALVERARRENPFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEAGVDLLFAPGVEEMYPEGFATRVQVEGPLTALWEGAVRPGHFQGVATVVARLFLLVQPQRAYFGEKDYQQLLVVRRMVRDLGFPVEVVGVPTVREEDGLALSSRNVYLSPETRKKAPVLYRALLAMREVAGQGGSVAEALRA-GEEALRAVPEFRKDYLAIVHPETLLPLSDWVAGARGIVAGRFPEARLIDNLEVY--
General information:
TITO was launched using:
RESULT:
Template:
1V8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168873 for 2291 contacts (-73.7/contact) +
2D Compatibility (PS) -29685 + (NN) -12274 + (LL) 1072
1D Compatibility (HY) -22000 + (ID) 5750
Total energy: -237510.0 ( -103.67 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1V8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8F-query.scw
PDB file :
Tito_Scwrl_1V8F.pdb
: