Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLIINGAKAFGHSGGKLNETLTHHAKKILESLGLEVDTTIVDKG-------------------------------------YEKSQEVEKFFSADATIWQMPGWWMGEPWIVKKYIDEVFTSGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVY-LHLHKAFQFLGLSALPTFICNDVMKN--PQVEQYLNSLTVHLRQAFGK |
| 1D4A Chain:A ((2-215)) | GRRALIVLAHSE----RTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAM----------Y-DKGPFRSKKAVLSITTGGSGSMYSLQG--IHG-DMNVILWPIQSGILHFCGFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1D4A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69887 for 1327 contacts (-52.7/contact) +
2D Compatibility (PS) -18436 + (NN) -5051 + (LL) 40
1D Compatibility (HY) -9200 + (ID) 1950
Total energy: -104484.0 ( -78.74 by residue)
QMean score : 0.528
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