Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
2VXN Chain:A ((4-250))
KPQPIAAANWKCNGTTASIEKLVQVFNEHTI-SHDVQCVVAPTFVHIPLVQAKLRNPKYVISAQNAI-AKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPE-FRDIIDAT-
General information:
TITO was launched using:
RESULT:
Template:
2VXN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102748 for 2140 contacts (-48.0/contact) +
2D Compatibility (PS) -26987 + (NN) -12284 + (LL) 140
1D Compatibility (HY) -16800 + (ID) 5200
Total energy: -163879.0 ( -76.58 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_2VXN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXN-query.scw
PDB file :
Tito_Scwrl_2VXN.pdb
: