Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGIDFIK-TREPGGSPISEKVRNIVLGIGN-EEMDPKTEVLLIAGARRQHVVETIRPALAAGKSVLCDRFMDSSLAYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKEDITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA
3LV8 Chain:A ((26-230))
-NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLER-----EL--DRIEKMDISFFERARERYLELANSD-DSVVMIDAAQSIEQVTADIRRALQDWL-
General information:
TITO was launched using:
RESULT:
Template:
3LV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45001 for 1579 contacts (-28.5/contact) +
2D Compatibility (PS) -21474 + (NN) -8596 + (LL) 984
1D Compatibility (HY) -9600 + (ID) 3700
Total energy: -87387.0 ( -55.34 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_3LV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LV8-query.scw
PDB file :
Tito_Scwrl_3LV8.pdb
: