Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSFKDFNFKPYIQRALDELKFVDPTDVQAKLIPVVRS--GRDLVGESKTGSGKTHTFLLPIFEKLDES----SDDVQVVITAPSRELGTQIYQATKQIAEHSEQ--EIRVVNYVGGTDKLRQIEKLKVSQPHIVIGTPGRIYDLVKSG-DLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLP-------KDVQILVFSATIPQKLQPFLKKYLTNPVMEKIKTAT----VIADTIDNWLLSTK-GRDKN----AQILELSK-LMQPYLAMIFVNTKERADELHSYLSSN---GLKVAKIHGGIAPRERKRIMNQVKNLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIRELEKLGINFIPKVIKNGEFQDTYDRDRRNNREKSYQKLDTEMIGLVKKKKKKIKPGYKKKIQWKVDEKRRKERRASNRAKGRAERKAKKQSF |
| 3SQW Chain:A ((25-408)) | ----EGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPEDISDIVISLISSYRSCIKEYRFSERRILPEIASTYGVLLNDPQLKIPVSRRFLDKLG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194519 for 2992 contacts (-65.0/contact) +
2D Compatibility (PS) -38866 + (NN) -13732 + (LL) 376
1D Compatibility (HY) -25600 + (ID) 5550
Total energy: -277891.0 ( -92.88 by residue)
QMean score : 0.514
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