Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWMIN---NDRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIKES----GITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSPQPWK-----------------------EWRETDKHFDQGNL
1S1P Chain:A ((6-160))
--QCVKLNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTTWEAMEKCKDAGLA
General information:
TITO was launched using:
RESULT:
Template:
1S1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35629 for 900 contacts (-39.6/contact) +
2D Compatibility (PS) -13233 + (NN) -2566 + (LL) 260
1D Compatibility (HY) -8000 + (ID) 2350
Total energy: -61518.0 ( -68.35 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1S1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S1P-query.scw
PDB file :
Tito_Scwrl_1S1P.pdb
: