Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLTLFTHINSFVWGPPLLALLVGTGIYLSFRLGFIQLRQLSRAFKLIFREDNGQGDISSYAALATALAATVGTGNIVGVATAIKSGGPGALFWMWVAAFFGMATKYAEGLLAIKYRTKDTNGEISGGPMYYIVNGMGQKWKPL-AVFFSAAGILVALLGIGTFTQVNAIASALEHTFKI--ST---RFTSLILAVIVLFIIFGGIKSISKVSEKIVPFMAISYILATLIII-AVNYNKIPHTFQLIFSGAFSGTAAIGGFSGAIVKEAIQKGIARGVFSNESGLGSAPIAAAAAKTKEPVEQGLISMTGTFIDTIVICTLTGIAIL-VTGKWLEFDLQGAPLTQASFNTVFGSLGSFALTFCLVLFAFTTILGWSYYGERCFEYLFGTKFINAYRIIFVIMVGLGGFLQLDLIWVIADIVNGLMALPNLIALLVLSPIIVKETQKYFSETKNITKP |
3L1L Chain:A ((7-308)) | -----------------------------------------------------AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPS-------PGGSYAYARRCFGPFLGYQTNVLYWLACW------IGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA-----------------A---------IQSTLNVTLWSF---IGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRV-SASPFG-DAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3L1L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -217331 for 2479 contacts (-87.7/contact) +
2D Compatibility (PS) -29314 + (NN) -4890 + (LL) 6916
1D Compatibility (HY) -12800 + (ID) 2350
Total energy: -259769.0 ( -104.79 by residue)
QMean score : 0.303
|
|
|